Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf3Q8C120 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf3Q8C120 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf3Q8C120 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf3Q8C120 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sh3rf3Q8C120 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.33■□□□□ 0.53
Sh3rf3Q8C120 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sh3rf3Q8C120 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf3Q8C120 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Trmt13-210ENSMUST00000198454 880 ntBASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf3Q8C120 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms