Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf2Q8BZT2 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf2Q8BZT2 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf2Q8BZT2 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf2Q8BZT2 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf2Q8BZT2 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Fst-202ENSMUST00000223640 2612 ntBASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf2Q8BZT2 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Gm37374-201ENSMUST00000194954 1829 ntBASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf2Q8BZT2 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Gm24841-201ENSMUST00000158676 357 ntBASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf2Q8BZT2 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.86■□□□□ 0.45
Sh3rf2Q8BZT2 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf2Q8BZT2 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf2Q8BZT2 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.84■□□□□ 0.45
Sh3rf2Q8BZT2 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf2Q8BZT2 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf2Q8BZT2 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.84■□□□□ 0.45
Sh3rf2Q8BZT2 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf2Q8BZT2 Gm2274-201ENSMUST00000184539 609 ntBASIC17.84■□□□□ 0.45
Sh3rf2Q8BZT2 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf2Q8BZT2 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf2Q8BZT2 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms