Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Ubp1Q811S7 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Ubp1Q811S7 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC17.38■□□□□ 0.37
Ubp1Q811S7 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
Ubp1Q811S7 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Gm10698-201ENSMUST00000182663 604 ntBASIC17.37■□□□□ 0.37
Ubp1Q811S7 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubp1Q811S7 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Gm10654-201ENSMUST00000098653 1633 ntBASIC17.36■□□□□ 0.37
Ubp1Q811S7 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Gm29241-201ENSMUST00000189260 1096 ntBASIC17.36■□□□□ 0.37
Ubp1Q811S7 Gm42545-201ENSMUST00000202755 922 ntBASIC17.36■□□□□ 0.37
Ubp1Q811S7 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
Ubp1Q811S7 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.36■□□□□ 0.37
Ubp1Q811S7 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Ubp1Q811S7 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.35■□□□□ 0.37
Ubp1Q811S7 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Mir6349-201ENSMUST00000184059 97 ntBASIC17.35■□□□□ 0.37
Ubp1Q811S7 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.35■□□□□ 0.37
Ubp1Q811S7 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Rarb-207ENSMUST00000225921 2756 ntBASIC17.35■□□□□ 0.37
Ubp1Q811S7 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Gm5828-201ENSMUST00000071842 1860 ntBASIC17.35■□□□□ 0.37
Ubp1Q811S7 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ubp1Q811S7 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Gm15378-201ENSMUST00000121894 207 ntBASIC17.34■□□□□ 0.37
Ubp1Q811S7 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Ubp1Q811S7 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Gm18025-201ENSMUST00000221733 862 ntBASIC17.34■□□□□ 0.37
Ubp1Q811S7 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ubp1Q811S7 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ubp1Q811S7 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ubp1Q811S7 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ubp1Q811S7 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubp1Q811S7 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ubp1Q811S7 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC17.33■□□□□ 0.36
Ubp1Q811S7 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.33■□□□□ 0.36
Ubp1Q811S7 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ubp1Q811S7 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.33■□□□□ 0.36
Ubp1Q811S7 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC17.33■□□□□ 0.36
Ubp1Q811S7 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubp1Q811S7 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubp1Q811S7 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubp1Q811S7 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms