Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim56Q80VI1 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim56Q80VI1 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim56Q80VI1 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.86■□□□□ 0.93
Trim56Q80VI1 Gm37194-201ENSMUST00000193092 3031 ntBASIC20.86■□□□□ 0.93
Trim56Q80VI1 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim56Q80VI1 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Gm4974-201ENSMUST00000209974 875 ntBASIC20.85■□□□□ 0.93
Trim56Q80VI1 Otx2os1-204ENSMUST00000227221 751 ntBASIC20.85■□□□□ 0.93
Trim56Q80VI1 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim56Q80VI1 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim56Q80VI1 Mir6982-201ENSMUST00000184354 68 ntBASIC20.84■□□□□ 0.93
Trim56Q80VI1 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC20.84■□□□□ 0.93
Trim56Q80VI1 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.84■□□□□ 0.93
Trim56Q80VI1 Gm21814-202ENSMUST00000203277 873 ntBASIC20.84■□□□□ 0.93
Trim56Q80VI1 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC20.84■□□□□ 0.93
Trim56Q80VI1 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim56Q80VI1 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim56Q80VI1 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.83■□□□□ 0.92
Trim56Q80VI1 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim56Q80VI1 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim56Q80VI1 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Trim56Q80VI1 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.82■□□□□ 0.92
Trim56Q80VI1 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Mir8112-201ENSMUST00000184382 131 ntBASIC20.82■□□□□ 0.92
Trim56Q80VI1 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Arhgef4-208ENSMUST00000211073 171 ntBASIC20.82■□□□□ 0.92
Trim56Q80VI1 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Trim56Q80VI1 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Trim56Q80VI1 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim56Q80VI1 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trim56Q80VI1 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Trim56Q80VI1 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim56Q80VI1 Gm12085-201ENSMUST00000119263 940 ntBASIC20.81■□□□□ 0.92
Trim56Q80VI1 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC20.81■□□□□ 0.92
Trim56Q80VI1 AC156016.1-201ENSMUST00000227190 1035 ntBASIC20.81■□□□□ 0.92
Trim56Q80VI1 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim56Q80VI1 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim56Q80VI1 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim56Q80VI1 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim56Q80VI1 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Trim56Q80VI1 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim56Q80VI1 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim56Q80VI1 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.8■□□□□ 0.92
Trim56Q80VI1 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.8■□□□□ 0.92
Trim56Q80VI1 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Gm3375-201ENSMUST00000203929 796 ntBASIC20.8■□□□□ 0.92
Trim56Q80VI1 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.8■□□□□ 0.92
Trim56Q80VI1 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Gm9694-201ENSMUST00000193347 1189 ntBASIC20.79■□□□□ 0.92
Trim56Q80VI1 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Timm23-208ENSMUST00000226683 750 ntBASIC20.79■□□□□ 0.92
Trim56Q80VI1 Gm5417-201ENSMUST00000079706 384 ntBASIC20.79■□□□□ 0.92
Trim56Q80VI1 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
Trim56Q80VI1 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms