Protein–RNA interactions for Protein: Q62232

Six2, Homeobox protein SIX2, mousemouse

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six2Q62232 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Six2Q62232 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.82■□□□□ 0.6
Six2Q62232 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Six2Q62232 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.82■□□□□ 0.6
Six2Q62232 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.82■□□□□ 0.6
Six2Q62232 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Six2Q62232 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Gm13158-201ENSMUST00000122007 736 ntBASIC18.81■□□□□ 0.6
Six2Q62232 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.81■□□□□ 0.6
Six2Q62232 Gm37856-201ENSMUST00000191634 999 ntBASIC18.81■□□□□ 0.6
Six2Q62232 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Six2Q62232 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Six2Q62232 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Six2Q62232 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.8■□□□□ 0.6
Six2Q62232 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Six2Q62232 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Six2Q62232 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Six2Q62232 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Six2Q62232 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Six2Q62232 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Six2Q62232 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.8■□□□□ 0.6
Six2Q62232 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.8■□□□□ 0.6
Six2Q62232 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Six2Q62232 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Six2Q62232 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.8■□□□□ 0.6
Six2Q62232 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Six2Q62232 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Six2Q62232 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Six2Q62232 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Six2Q62232 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Six2Q62232 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Six2Q62232 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Six2Q62232 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Six2Q62232 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.79■□□□□ 0.6
Six2Q62232 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Six2Q62232 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Six2Q62232 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Six2Q62232 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Six2Q62232 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Six2Q62232 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Six2Q62232 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Six2Q62232 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Six2Q62232 Gm6576-201ENSMUST00000169678 883 ntBASIC18.78■□□□□ 0.6
Six2Q62232 Gm18025-201ENSMUST00000221733 862 ntBASIC18.78■□□□□ 0.6
Six2Q62232 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.78■□□□□ 0.6
Six2Q62232 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Six2Q62232 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Six2Q62232 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Six2Q62232 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Six2Q62232 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Six2Q62232 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.77■□□□□ 0.6
Six2Q62232 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Six2Q62232 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Six2Q62232 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Six2Q62232 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Six2Q62232 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.77■□□□□ 0.6
Six2Q62232 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.77■□□□□ 0.6
Six2Q62232 Gm42545-201ENSMUST00000202755 922 ntBASIC18.77■□□□□ 0.6
Six2Q62232 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.77■□□□□ 0.6
Six2Q62232 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Six2Q62232 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Six2Q62232 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Six2Q62232 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Six2Q62232 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Six2Q62232 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Six2Q62232 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Six2Q62232 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Six2Q62232 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Six2Q62232 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Six2Q62232 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Six2Q62232 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Six2Q62232 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Six2Q62232 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Six2Q62232 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Six2Q62232 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Six2Q62232 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms