Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC19.86■□□□□ 0.77
Col11a1Q61245 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.86■□□□□ 0.77
Col11a1Q61245 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Col11a1Q61245 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 Gm43347-201ENSMUST00000200226 580 ntBASIC19.86■□□□□ 0.77
Col11a1Q61245 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col11a1Q61245 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col11a1Q61245 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col11a1Q61245 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col11a1Q61245 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.85■□□□□ 0.77
Col11a1Q61245 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
Col11a1Q61245 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC19.85■□□□□ 0.77
Col11a1Q61245 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
Col11a1Q61245 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.85■□□□□ 0.77
Col11a1Q61245 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col11a1Q61245 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col11a1Q61245 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col11a1Q61245 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col11a1Q61245 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col11a1Q61245 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Col11a1Q61245 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC19.84■□□□□ 0.77
Col11a1Q61245 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col11a1Q61245 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC19.84■□□□□ 0.77
Col11a1Q61245 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC19.84■□□□□ 0.77
Col11a1Q61245 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col11a1Q61245 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col11a1Q61245 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col11a1Q61245 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Col11a1Q61245 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.84■□□□□ 0.77
Col11a1Q61245 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col11a1Q61245 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col11a1Q61245 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col11a1Q61245 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col11a1Q61245 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col11a1Q61245 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col11a1Q61245 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col11a1Q61245 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Col11a1Q61245 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col11a1Q61245 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col11a1Q61245 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.83■□□□□ 0.76
Col11a1Q61245 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
Col11a1Q61245 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC19.83■□□□□ 0.76
Col11a1Q61245 AC159301.1-201ENSMUST00000225130 1182 ntBASIC19.83■□□□□ 0.76
Col11a1Q61245 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
Col11a1Q61245 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col11a1Q61245 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Col11a1Q61245 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col11a1Q61245 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Col11a1Q61245 Gm27525-201ENSMUST00000184465 107 ntBASIC19.82■□□□□ 0.76
Col11a1Q61245 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col11a1Q61245 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Col11a1Q61245 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col11a1Q61245 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Col11a1Q61245 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC19.81■□□□□ 0.76
Col11a1Q61245 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col11a1Q61245 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Col11a1Q61245 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col11a1Q61245 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col11a1Q61245 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col11a1Q61245 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Col11a1Q61245 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col11a1Q61245 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col11a1Q61245 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC19.81■□□□□ 0.76
Col11a1Q61245 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC19.81■□□□□ 0.76
Col11a1Q61245 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Col11a1Q61245 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col11a1Q61245 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC19.8■□□□□ 0.76
Col11a1Q61245 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col11a1Q61245 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col11a1Q61245 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col11a1Q61245 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col11a1Q61245 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Col11a1Q61245 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC19.8■□□□□ 0.76
Col11a1Q61245 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Col11a1Q61245 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col11a1Q61245 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col11a1Q61245 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col11a1Q61245 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col11a1Q61245 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col11a1Q61245 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC19.79■□□□□ 0.76
Col11a1Q61245 Ighv6-1-201ENSMUST00000193612 343 ntBASIC19.79■□□□□ 0.76
Col11a1Q61245 AC154855.1-201ENSMUST00000227353 1458 ntBASIC19.79■□□□□ 0.76
Col11a1Q61245 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Col11a1Q61245 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col11a1Q61245 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col11a1Q61245 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.79■□□□□ 0.76
Col11a1Q61245 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.79■□□□□ 0.76
Col11a1Q61245 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col11a1Q61245 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Col11a1Q61245 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Col11a1Q61245 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC19.78■□□□□ 0.76
Col11a1Q61245 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms