Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CtcfQ61164 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CtcfQ61164 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.39■□□□□ 0.69
CtcfQ61164 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CtcfQ61164 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CtcfQ61164 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.38■□□□□ 0.69
CtcfQ61164 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CtcfQ61164 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CtcfQ61164 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Gm42569-201ENSMUST00000200539 472 ntBASIC19.38■□□□□ 0.69
CtcfQ61164 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CtcfQ61164 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CtcfQ61164 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CtcfQ61164 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.37■□□□□ 0.69
CtcfQ61164 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC19.37■□□□□ 0.69
CtcfQ61164 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CtcfQ61164 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CtcfQ61164 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC19.36■□□□□ 0.69
CtcfQ61164 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.36■□□□□ 0.69
CtcfQ61164 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CtcfQ61164 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CtcfQ61164 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CtcfQ61164 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CtcfQ61164 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC19.35■□□□□ 0.69
CtcfQ61164 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CtcfQ61164 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.35■□□□□ 0.69
CtcfQ61164 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CtcfQ61164 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CtcfQ61164 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CtcfQ61164 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CtcfQ61164 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CtcfQ61164 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CtcfQ61164 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.34■□□□□ 0.69
CtcfQ61164 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.34■□□□□ 0.69
CtcfQ61164 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
CtcfQ61164 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CtcfQ61164 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.34■□□□□ 0.69
CtcfQ61164 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
CtcfQ61164 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CtcfQ61164 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CtcfQ61164 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms