Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Trim41Q5NCC3 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Trim41Q5NCC3 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Trim41Q5NCC3 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Trim41Q5NCC3 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC30.61■■■□□ 2.49
Trim41Q5NCC3 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
Trim41Q5NCC3 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC30.6■■■□□ 2.49
Trim41Q5NCC3 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Trim41Q5NCC3 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Trim41Q5NCC3 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim41Q5NCC3 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim41Q5NCC3 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim41Q5NCC3 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim41Q5NCC3 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Trim41Q5NCC3 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim41Q5NCC3 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim41Q5NCC3 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 AC164629.2-201ENSMUST00000217916 270 ntBASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Golph3-205ENSMUST00000228671 2842 ntBASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim41Q5NCC3 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Trim41Q5NCC3 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC30.57■■■□□ 2.48
Trim41Q5NCC3 Gm4217-201ENSMUST00000182243 1002 ntBASIC30.57■■■□□ 2.48
Trim41Q5NCC3 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Trim41Q5NCC3 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Trim41Q5NCC3 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Trim41Q5NCC3 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Gm7638-201ENSMUST00000121348 967 ntBASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
Trim41Q5NCC3 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Trim41Q5NCC3 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Trim41Q5NCC3 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim41Q5NCC3 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim41Q5NCC3 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Trim41Q5NCC3 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Trim41Q5NCC3 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Trim41Q5NCC3 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim41Q5NCC3 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim41Q5NCC3 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim41Q5NCC3 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim41Q5NCC3 Gm38342-201ENSMUST00000195710 2980 ntBASIC30.53■■■□□ 2.48
Trim41Q5NCC3 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Gm27525-201ENSMUST00000184465 107 ntBASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Trim41Q5NCC3 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms