Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Usp28Q5I043 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.06■□□□□ 0.8
Usp28Q5I043 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.06■□□□□ 0.8
Usp28Q5I043 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.06■□□□□ 0.8
Usp28Q5I043 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Usp28Q5I043 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp28Q5I043 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Usp28Q5I043 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp28Q5I043 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp28Q5I043 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usp28Q5I043 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp28Q5I043 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp28Q5I043 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.05■□□□□ 0.8
Usp28Q5I043 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp28Q5I043 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usp28Q5I043 Flg-201ENSMUST00000050758 1488 ntBASIC20.05■□□□□ 0.8
Usp28Q5I043 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Usp28Q5I043 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp28Q5I043 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp28Q5I043 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp28Q5I043 Gm13401-201ENSMUST00000117074 291 ntBASIC20.04■□□□□ 0.8
Usp28Q5I043 Gm11927-201ENSMUST00000118472 759 ntBASIC20.04■□□□□ 0.8
Usp28Q5I043 Mir5133-201ENSMUST00000174955 77 ntBASIC20.04■□□□□ 0.8
Usp28Q5I043 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.04■□□□□ 0.8
Usp28Q5I043 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp28Q5I043 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC20.04■□□□□ 0.8
Usp28Q5I043 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp28Q5I043 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp28Q5I043 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp28Q5I043 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Mtag2-201ENSMUST00000058665 714 ntBASIC20.03■□□□□ 0.8
Usp28Q5I043 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usp28Q5I043 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp28Q5I043 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp28Q5I043 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Usp28Q5I043 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Usp28Q5I043 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.02■□□□□ 0.8
Usp28Q5I043 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp28Q5I043 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp28Q5I043 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC20.02■□□□□ 0.8
Usp28Q5I043 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp28Q5I043 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp28Q5I043 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp28Q5I043 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Usp28Q5I043 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp28Q5I043 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Usp28Q5I043 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Usp28Q5I043 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp28Q5I043 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Usp28Q5I043 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp28Q5I043 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Usp28Q5I043 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp28Q5I043 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp28Q5I043 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp28Q5I043 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp28Q5I043 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp28Q5I043 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.01■□□□□ 0.79
Usp28Q5I043 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC20■□□□□ 0.79
Usp28Q5I043 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp28Q5I043 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp28Q5I043 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Usp28Q5I043 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20■□□□□ 0.79
Usp28Q5I043 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Usp28Q5I043 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Usp28Q5I043 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp28Q5I043 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Usp28Q5I043 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Usp28Q5I043 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp28Q5I043 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp28Q5I043 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Usp28Q5I043 Gm43859-201ENSMUST00000200075 1412 ntBASIC20■□□□□ 0.79
Usp28Q5I043 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Usp28Q5I043 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp28Q5I043 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp28Q5I043 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp28Q5I043 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms