Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm29791-202ENSMUST00000207888 369 ntBASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Gm10698-201ENSMUST00000182663 604 ntBASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3bQ3ULL6 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3bQ3ULL6 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Upf3bQ3ULL6 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.86■□□□□ 0.61
Upf3bQ3ULL6 Gm11643-201ENSMUST00000119578 864 ntBASIC18.86■□□□□ 0.61
Upf3bQ3ULL6 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3bQ3ULL6 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3bQ3ULL6 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Upf3bQ3ULL6 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3bQ3ULL6 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3bQ3ULL6 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3bQ3ULL6 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.84■□□□□ 0.61
Upf3bQ3ULL6 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.83■□□□□ 0.61
Upf3bQ3ULL6 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Upf3bQ3ULL6 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Upf3bQ3ULL6 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.83■□□□□ 0.61
Upf3bQ3ULL6 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Upf3bQ3ULL6 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3bQ3ULL6 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Gm37292-201ENSMUST00000192062 758 ntBASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Gm43183-201ENSMUST00000200632 547 ntBASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3bQ3ULL6 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms