Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx1P48377 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC21.1■□□□□ 0.97
Rfx1P48377 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx1P48377 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx1P48377 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx1P48377 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC21.1■□□□□ 0.97
Rfx1P48377 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx1P48377 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx1P48377 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
Rfx1P48377 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx1P48377 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx1P48377 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx1P48377 Gm10655-201ENSMUST00000098658 1397 ntBASIC21.1■□□□□ 0.97
Rfx1P48377 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx1P48377 Gm37563-201ENSMUST00000192580 1513 ntBASIC21.09■□□□□ 0.97
Rfx1P48377 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx1P48377 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx1P48377 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC21.09■□□□□ 0.97
Rfx1P48377 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx1P48377 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.09■□□□□ 0.97
Rfx1P48377 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx1P48377 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx1P48377 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx1P48377 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Rfx1P48377 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC21.09■□□□□ 0.97
Rfx1P48377 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx1P48377 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Rfx1P48377 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
Rfx1P48377 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Rfx1P48377 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Rfx1P48377 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Rfx1P48377 Gm9954-202ENSMUST00000198686 4725 ntBASIC21.08■□□□□ 0.97
Rfx1P48377 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Rfx1P48377 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Rfx1P48377 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Rfx1P48377 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
Rfx1P48377 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.08■□□□□ 0.97
Rfx1P48377 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Rfx1P48377 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Rfx1P48377 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Rfx1P48377 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
Rfx1P48377 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Rfx1P48377 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Rfx1P48377 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC21.07■□□□□ 0.96
Rfx1P48377 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC21.07■□□□□ 0.96
Rfx1P48377 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC21.07■□□□□ 0.96
Rfx1P48377 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Gm44544-201ENSMUST00000207052 1844 ntBASIC21.07■□□□□ 0.96
Rfx1P48377 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC21.07■□□□□ 0.96
Rfx1P48377 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Shroom3-211ENSMUST00000225438 5742 ntBASIC21.07■□□□□ 0.96
Rfx1P48377 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Rfx1P48377 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx1P48377 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Rfx1P48377 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21.06■□□□□ 0.96
Rfx1P48377 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Rfx1P48377 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx1P48377 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx1P48377 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx1P48377 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx1P48377 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx1P48377 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx1P48377 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
Rfx1P48377 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.05■□□□□ 0.96
Rfx1P48377 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx1P48377 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx1P48377 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx1P48377 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx1P48377 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Rfx1P48377 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Rfx1P48377 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
Rfx1P48377 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms