Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
Slc6a1P31648 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Slc6a1P31648 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
Slc6a1P31648 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Slc6a1P31648 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Slc6a1P31648 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 AC165080.2-201ENSMUST00000217491 1530 ntBASIC15.17■□□□□ 0.02
Slc6a1P31648 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Slc6a1P31648 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Slc6a1P31648 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC15.17■□□□□ 0.02
Slc6a1P31648 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC15.17■□□□□ 0.02
Slc6a1P31648 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
Slc6a1P31648 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Slc6a1P31648 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Slc6a1P31648 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Slc6a1P31648 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Slc6a1P31648 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Slc6a1P31648 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Slc35b2-207ENSMUST00000226086 850 ntBASIC15.16■□□□□ 0.02
Slc6a1P31648 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Slc6a1P31648 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Slc6a1P31648 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Slc6a1P31648 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Slc6a1P31648 Gm40848-201ENSMUST00000221998 324 ntBASIC15.15■□□□□ 0.02
Slc6a1P31648 AC107452.1-201ENSMUST00000227963 481 ntBASIC15.15■□□□□ 0.02
Slc6a1P31648 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Slc6a1P31648 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Slc6a1P31648 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Slc6a1P31648 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC15.15■□□□□ 0.02
Slc6a1P31648 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Slc6a1P31648 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
Slc6a1P31648 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC15.14■□□□□ 0.01
Slc6a1P31648 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 AC099934.2-201ENSMUST00000196389 70 ntBASIC15.14■□□□□ 0.01
Slc6a1P31648 AC156953.1-201ENSMUST00000196953 70 ntBASIC15.14■□□□□ 0.01
Slc6a1P31648 AC157822.2-201ENSMUST00000200291 70 ntBASIC15.14■□□□□ 0.01
Slc6a1P31648 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Slc6a1P31648 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms