Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
Col1a1P11087 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Col1a1P11087 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC20.69■□□□□ 0.9
Col1a1P11087 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC20.69■□□□□ 0.9
Col1a1P11087 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC20.69■□□□□ 0.9
Col1a1P11087 Gm6623-201ENSMUST00000173570 544 ntBASIC20.69■□□□□ 0.9
Col1a1P11087 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col1a1P11087 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Col1a1P11087 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col1a1P11087 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC20.69■□□□□ 0.9
Col1a1P11087 Mzt1-203ENSMUST00000227948 952 ntBASIC20.69■□□□□ 0.9
Col1a1P11087 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col1a1P11087 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col1a1P11087 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col1a1P11087 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col1a1P11087 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col1a1P11087 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col1a1P11087 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
Col1a1P11087 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col1a1P11087 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC20.68■□□□□ 0.9
Col1a1P11087 Gm34391-201ENSMUST00000203706 907 ntBASIC20.68■□□□□ 0.9
Col1a1P11087 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col1a1P11087 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col1a1P11087 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col1a1P11087 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Col1a1P11087 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Col1a1P11087 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col1a1P11087 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col1a1P11087 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col1a1P11087 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col1a1P11087 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col1a1P11087 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col1a1P11087 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col1a1P11087 Gm45328-201ENSMUST00000210942 917 ntBASIC20.67■□□□□ 0.9
Col1a1P11087 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC20.67■□□□□ 0.9
Col1a1P11087 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col1a1P11087 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col1a1P11087 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Col1a1P11087 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col1a1P11087 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col1a1P11087 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.66■□□□□ 0.9
Col1a1P11087 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC20.66■□□□□ 0.9
Col1a1P11087 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col1a1P11087 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC20.66■□□□□ 0.9
Col1a1P11087 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col1a1P11087 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.66■□□□□ 0.9
Col1a1P11087 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
Col1a1P11087 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col1a1P11087 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col1a1P11087 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Col1a1P11087 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Col1a1P11087 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col1a1P11087 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col1a1P11087 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Col1a1P11087 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col1a1P11087 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
Col1a1P11087 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col1a1P11087 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col1a1P11087 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col1a1P11087 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC20.65■□□□□ 0.9
Col1a1P11087 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col1a1P11087 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col1a1P11087 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col1a1P11087 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC20.64■□□□□ 0.89
Col1a1P11087 Ighv6-1-201ENSMUST00000193612 343 ntBASIC20.64■□□□□ 0.89
Col1a1P11087 AC164629.2-201ENSMUST00000217916 270 ntBASIC20.64■□□□□ 0.89
Col1a1P11087 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col1a1P11087 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col1a1P11087 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col1a1P11087 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.64■□□□□ 0.89
Col1a1P11087 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col1a1P11087 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col1a1P11087 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col1a1P11087 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col1a1P11087 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Col1a1P11087 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
Col1a1P11087 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
Col1a1P11087 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
Col1a1P11087 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Col1a1P11087 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col1a1P11087 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Col1a1P11087 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
Col1a1P11087 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms