Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Gm43338-201ENSMUST00000198617 2223 ntBASIC14.66□□□□□ -0.06
Hmgb3O54879 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Hmgb3O54879 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC14.65□□□□□ -0.06
Hmgb3O54879 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Hmgb3O54879 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC14.65□□□□□ -0.06
Hmgb3O54879 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Gm5576-201ENSMUST00000075809 1236 ntBASIC14.65□□□□□ -0.06
Hmgb3O54879 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 AC165080.2-201ENSMUST00000217491 1530 ntBASIC14.65□□□□□ -0.06
Hmgb3O54879 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Hmgb3O54879 Gm45244-201ENSMUST00000211328 2200 ntBASIC14.65□□□□□ -0.06
Hmgb3O54879 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC14.65□□□□□ -0.06
Hmgb3O54879 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb3O54879 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb3O54879 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Hmgb3O54879 Spcs1-204ENSMUST00000226782 949 ntBASIC14.64□□□□□ -0.07
Hmgb3O54879 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Hmgb3O54879 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb3O54879 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb3O54879 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Hmgb3O54879 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb3O54879 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb3O54879 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb3O54879 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb3O54879 Gm26917-202ENSMUST00000192833 3329 ntBASIC14.63□□□□□ -0.07
Hmgb3O54879 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Hmgb3O54879 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC14.63□□□□□ -0.07
Hmgb3O54879 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb3O54879 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb3O54879 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC14.63□□□□□ -0.07
Hmgb3O54879 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb3O54879 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb3O54879 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms