Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Clk3O35492 Gm8309-201ENSMUST00000206627 1448 ntBASIC16.79■□□□□ 0.28
Clk3O35492 Gm43294-201ENSMUST00000202850 2490 ntBASIC16.79■□□□□ 0.28
Clk3O35492 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Clk3O35492 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Gm3807-201ENSMUST00000193520 1168 ntBASIC16.79■□□□□ 0.28
Clk3O35492 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Clk3O35492 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Clk3O35492 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Clk3O35492 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
Clk3O35492 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC16.79■□□□□ 0.28
Clk3O35492 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC16.79■□□□□ 0.28
Clk3O35492 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk3O35492 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC16.78■□□□□ 0.28
Clk3O35492 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC16.78■□□□□ 0.28
Clk3O35492 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC16.78■□□□□ 0.28
Clk3O35492 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC16.78■□□□□ 0.28
Clk3O35492 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 AC121961.1-201ENSMUST00000218594 1779 ntBASIC16.78■□□□□ 0.28
Clk3O35492 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clk3O35492 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Clk3O35492 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Clk3O35492 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Clk3O35492 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC16.77■□□□□ 0.28
Clk3O35492 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clk3O35492 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clk3O35492 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Clk3O35492 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Clk3O35492 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clk3O35492 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clk3O35492 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clk3O35492 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Clk3O35492 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clk3O35492 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Clk3O35492 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Clk3O35492 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC16.76■□□□□ 0.27
Clk3O35492 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
Clk3O35492 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Clk3O35492 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Clk3O35492 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.76■□□□□ 0.27
Clk3O35492 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk3O35492 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Clk3O35492 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk3O35492 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
Clk3O35492 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk3O35492 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Clk3O35492 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clk3O35492 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk3O35492 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk3O35492 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk3O35492 Gm37805-201ENSMUST00000192612 1094 ntBASIC16.75■□□□□ 0.27
Clk3O35492 Gm5408-201ENSMUST00000197998 747 ntBASIC16.75■□□□□ 0.27
Clk3O35492 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clk3O35492 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk3O35492 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk3O35492 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.75■□□□□ 0.27
Clk3O35492 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms