Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a6B1AVK5 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a6B1AVK5 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC18.25■□□□□ 0.51
Col4a6B1AVK5 Mir3081-201ENSMUST00000175305 84 ntBASIC18.25■□□□□ 0.51
Col4a6B1AVK5 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a6B1AVK5 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Col4a6B1AVK5 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.25■□□□□ 0.51
Col4a6B1AVK5 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a6B1AVK5 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a6B1AVK5 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a6B1AVK5 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a6B1AVK5 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a6B1AVK5 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a6B1AVK5 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Col4a6B1AVK5 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a6B1AVK5 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC18.24■□□□□ 0.51
Col4a6B1AVK5 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a6B1AVK5 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Col4a6B1AVK5 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a6B1AVK5 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a6B1AVK5 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Idnk-204ENSMUST00000226010 1898 ntBASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a6B1AVK5 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Gm18115-201ENSMUST00000221209 621 ntBASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Olfr129-201ENSMUST00000122318 993 ntBASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a6B1AVK5 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Gm27742-201ENSMUST00000184667 60 ntBASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.21■□□□□ 0.51
Col4a6B1AVK5 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.21■□□□□ 0.51
Col4a6B1AVK5 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Col4a6B1AVK5 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Gm24589-201ENSMUST00000116692 94 ntBASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a6B1AVK5 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a6B1AVK5 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.19■□□□□ 0.5
Col4a6B1AVK5 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms