Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn2aA0A0J9YTW6 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn2aA0A0J9YTW6 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Mir7071-201ENSMUST00000184847 69 ntBASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Timm23-208ENSMUST00000226683 750 ntBASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
Scn2aA0A0J9YTW6 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Idnk-204ENSMUST00000226010 1898 ntBASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn2aA0A0J9YTW6 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Gm43182-201ENSMUST00000199476 2528 ntBASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Mir6982-201ENSMUST00000184354 68 ntBASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Gm7712-202ENSMUST00000222331 1510 ntBASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn2aA0A0J9YTW6 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Gm3375-201ENSMUST00000203929 796 ntBASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn2aA0A0J9YTW6 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn2aA0A0J9YTW6 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn2aA0A0J9YTW6 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn2aA0A0J9YTW6 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn2aA0A0J9YTW6 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn2aA0A0J9YTW6 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn2aA0A0J9YTW6 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC16.17■□□□□ 0.18
Scn2aA0A0J9YTW6 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.17■□□□□ 0.18
Scn2aA0A0J9YTW6 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms