Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Gm27275-201ENSMUST00000184318 272 ntBASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Ddx56Q9D0R4 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx56Q9D0R4 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.58■□□□□ 0.57
Ddx56Q9D0R4 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx56Q9D0R4 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx56Q9D0R4 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx56Q9D0R4 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx56Q9D0R4 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.58■□□□□ 0.56
Ddx56Q9D0R4 Gm15375-201ENSMUST00000119510 849 ntBASIC18.58■□□□□ 0.56
Ddx56Q9D0R4 Gm13158-201ENSMUST00000122007 736 ntBASIC18.58■□□□□ 0.56
Ddx56Q9D0R4 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddx56Q9D0R4 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.58■□□□□ 0.56
Ddx56Q9D0R4 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.58■□□□□ 0.56
Ddx56Q9D0R4 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ddx56Q9D0R4 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddx56Q9D0R4 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddx56Q9D0R4 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Gm29257-201ENSMUST00000186115 639 ntBASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx56Q9D0R4 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ddx56Q9D0R4 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddx56Q9D0R4 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddx56Q9D0R4 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddx56Q9D0R4 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddx56Q9D0R4 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ddx56Q9D0R4 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms