Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Gm7514-201ENSMUST00000209475 934 ntBASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx28Q9CWT6 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Gm10849-201ENSMUST00000100397 618 ntBASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Gm37805-201ENSMUST00000192612 1094 ntBASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Gm6420-201ENSMUST00000193885 723 ntBASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 AV356131-201ENSMUST00000206201 750 ntBASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx28Q9CWT6 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 AC164629.5-201ENSMUST00000220387 632 ntBASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx28Q9CWT6 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Gm7291-201ENSMUST00000199147 382 ntBASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Ddx28Q9CWT6 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx28Q9CWT6 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx28Q9CWT6 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.52■□□□□ 0.23
Ddx28Q9CWT6 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx28Q9CWT6 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC16.52■□□□□ 0.23
Ddx28Q9CWT6 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx28Q9CWT6 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx28Q9CWT6 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx28Q9CWT6 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Nespas-201ENSMUST00000143738 1083 ntBASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Gm27405-201ENSMUST00000184201 112 ntBASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx28Q9CWT6 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms