Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msh4Q99MT2 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Msh4Q99MT2 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC17.23■□□□□ 0.35
Msh4Q99MT2 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msh4Q99MT2 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msh4Q99MT2 Gm13168-201ENSMUST00000121771 632 ntBASIC17.23■□□□□ 0.35
Msh4Q99MT2 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC17.23■□□□□ 0.35
Msh4Q99MT2 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.23■□□□□ 0.35
Msh4Q99MT2 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Msh4Q99MT2 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msh4Q99MT2 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msh4Q99MT2 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Gm2399-201ENSMUST00000104944 225 ntBASIC17.22■□□□□ 0.35
Msh4Q99MT2 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Gm22325-201ENSMUST00000158904 308 ntBASIC17.22■□□□□ 0.35
Msh4Q99MT2 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.22■□□□□ 0.35
Msh4Q99MT2 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh4Q99MT2 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.21■□□□□ 0.35
Msh4Q99MT2 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 AC121961.1-201ENSMUST00000218594 1779 ntBASIC17.21■□□□□ 0.35
Msh4Q99MT2 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Msh4Q99MT2 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Msh4Q99MT2 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Gm22240-201ENSMUST00000175225 82 ntBASIC17.2■□□□□ 0.34
Msh4Q99MT2 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
Msh4Q99MT2 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Gm15847-201ENSMUST00000121417 1065 ntBASIC17.19■□□□□ 0.34
Msh4Q99MT2 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.19■□□□□ 0.34
Msh4Q99MT2 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh4Q99MT2 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.19■□□□□ 0.34
Msh4Q99MT2 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Gm11249-201ENSMUST00000117071 859 ntBASIC17.18■□□□□ 0.34
Msh4Q99MT2 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Msh4Q99MT2 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms