Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Tgds-204ENSMUST00000228543 1594 ntBASIC18.7■□□□□ 0.58
Clp1Q99LI9 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.69■□□□□ 0.58
Clp1Q99LI9 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clp1Q99LI9 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Clp1Q99LI9 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Clp1Q99LI9 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.69■□□□□ 0.58
Clp1Q99LI9 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clp1Q99LI9 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clp1Q99LI9 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
Clp1Q99LI9 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Gm11355-201ENSMUST00000121120 306 ntBASIC18.68■□□□□ 0.58
Clp1Q99LI9 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clp1Q99LI9 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clp1Q99LI9 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Clp1Q99LI9 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.67■□□□□ 0.58
Clp1Q99LI9 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.67■□□□□ 0.58
Clp1Q99LI9 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Clp1Q99LI9 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.66■□□□□ 0.58
Clp1Q99LI9 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.66■□□□□ 0.58
Clp1Q99LI9 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clp1Q99LI9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Gm7153-201ENSMUST00000117092 455 ntBASIC18.65■□□□□ 0.58
Clp1Q99LI9 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.65■□□□□ 0.58
Clp1Q99LI9 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Gm42922-201ENSMUST00000195887 2078 ntBASIC18.65■□□□□ 0.58
Clp1Q99LI9 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clp1Q99LI9 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.64■□□□□ 0.58
Clp1Q99LI9 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Clp1Q99LI9 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Clp1Q99LI9 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.64■□□□□ 0.57
Clp1Q99LI9 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Clp1Q99LI9 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms