Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Nespas-201ENSMUST00000143738 1083 ntBASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28aQ8CEI3 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
Ccdc28aQ8CEI3 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28aQ8CEI3 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28aQ8CEI3 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Ccdc28aQ8CEI3 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Gm44544-201ENSMUST00000207052 1844 ntBASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ccdc28aQ8CEI3 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ccdc28aQ8CEI3 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms