Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 AC153881.1-201ENSMUST00000214448 284 ntBASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Vps53Q8CCB4 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Gm15378-201ENSMUST00000121894 207 ntBASIC20.59■□□□□ 0.89
Vps53Q8CCB4 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Vps53Q8CCB4 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Vps53Q8CCB4 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Vps53Q8CCB4 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Vps53Q8CCB4 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Vps53Q8CCB4 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Vps53Q8CCB4 Gm10698-201ENSMUST00000182663 604 ntBASIC20.58■□□□□ 0.89
Vps53Q8CCB4 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps53Q8CCB4 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps53Q8CCB4 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps53Q8CCB4 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Gm2399-201ENSMUST00000104944 225 ntBASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Gm43672-201ENSMUST00000199072 1731 ntBASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC20.57■□□□□ 0.88
Vps53Q8CCB4 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Vps53Q8CCB4 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps53Q8CCB4 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 H2-K2-201ENSMUST00000174250 1049 ntBASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps53Q8CCB4 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms