Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim47Q8C0E3 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Gm29791-202ENSMUST00000207888 369 ntBASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim47Q8C0E3 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim47Q8C0E3 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Gm21814-202ENSMUST00000203277 873 ntBASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Gm5417-201ENSMUST00000079706 384 ntBASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Dmtn-207ENSMUST00000228001 2437 ntBASIC19.59■□□□□ 0.73
Trim47Q8C0E3 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim47Q8C0E3 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
Trim47Q8C0E3 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim47Q8C0E3 Gm15565-201ENSMUST00000118890 427 ntBASIC19.58■□□□□ 0.72
Trim47Q8C0E3 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.58■□□□□ 0.72
Trim47Q8C0E3 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim47Q8C0E3 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim47Q8C0E3 Gm5828-201ENSMUST00000071842 1860 ntBASIC19.58■□□□□ 0.72
Trim47Q8C0E3 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.58■□□□□ 0.72
Trim47Q8C0E3 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Trim47Q8C0E3 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.58■□□□□ 0.72
Trim47Q8C0E3 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.57■□□□□ 0.72
Trim47Q8C0E3 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms