Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Trim56Q80VI1 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Trim56Q80VI1 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim56Q80VI1 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trim56Q80VI1 Gm10418-201ENSMUST00000100943 576 ntBASIC20.91■□□□□ 0.94
Trim56Q80VI1 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.91■□□□□ 0.94
Trim56Q80VI1 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim56Q80VI1 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim56Q80VI1 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Trim56Q80VI1 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim56Q80VI1 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim56Q80VI1 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim56Q80VI1 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Trim56Q80VI1 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim56Q80VI1 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim56Q80VI1 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.9■□□□□ 0.94
Trim56Q80VI1 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.9■□□□□ 0.94
Trim56Q80VI1 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim56Q80VI1 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim56Q80VI1 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim56Q80VI1 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim56Q80VI1 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim56Q80VI1 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.89■□□□□ 0.93
Trim56Q80VI1 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC20.89■□□□□ 0.93
Trim56Q80VI1 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim56Q80VI1 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.89■□□□□ 0.93
Trim56Q80VI1 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC20.89■□□□□ 0.93
Trim56Q80VI1 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trim56Q80VI1 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim56Q80VI1 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim56Q80VI1 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim56Q80VI1 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trim56Q80VI1 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC20.88■□□□□ 0.93
Trim56Q80VI1 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim56Q80VI1 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim56Q80VI1 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Trim56Q80VI1 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim56Q80VI1 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
Trim56Q80VI1 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC20.88■□□□□ 0.93
Trim56Q80VI1 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim56Q80VI1 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim56Q80VI1 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim56Q80VI1 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim56Q80VI1 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim56Q80VI1 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim56Q80VI1 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim56Q80VI1 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim56Q80VI1 Gm37055-201ENSMUST00000191866 133 ntBASIC20.86■□□□□ 0.93
Trim56Q80VI1 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim56Q80VI1 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms