Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Gm6576-201ENSMUST00000169678 883 ntBASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Arhgef33-211ENSMUST00000225658 473 ntBASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Idnk-204ENSMUST00000226010 1898 ntBASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Mir7071-201ENSMUST00000184847 69 ntBASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smarca1Q6PGB8 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Smarca1Q6PGB8 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Smarca1Q6PGB8 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Smarca1Q6PGB8 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smarca1Q6PGB8 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Mtag2-201ENSMUST00000058665 714 ntBASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC19.63■□□□□ 0.73
Smarca1Q6PGB8 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smarca1Q6PGB8 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smarca1Q6PGB8 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smarca1Q6PGB8 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms