Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rnf220Q6PDX6 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rnf220Q6PDX6 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rnf220Q6PDX6 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rnf220Q6PDX6 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rnf220Q6PDX6 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rnf220Q6PDX6 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rnf220Q6PDX6 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rnf220Q6PDX6 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 AC165080.2-201ENSMUST00000217491 1530 ntBASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rnf220Q6PDX6 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Flvcr1-202ENSMUST00000191946 1216 ntBASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf220Q6PDX6 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Gm21956-201ENSMUST00000179946 522 ntBASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf220Q6PDX6 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 AC137127.1-201ENSMUST00000213466 1078 ntBASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf220Q6PDX6 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf220Q6PDX6 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf220Q6PDX6 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf220Q6PDX6 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf220Q6PDX6 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf220Q6PDX6 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf220Q6PDX6 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms