Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Hmgb4Q6P8W9 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC18.52■□□□□ 0.55
Hmgb4Q6P8W9 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Hmgb4Q6P8W9 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Hmgb4Q6P8W9 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Hmgb4Q6P8W9 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Hmgb4Q6P8W9 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.51■□□□□ 0.55
Hmgb4Q6P8W9 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Gm43799-201ENSMUST00000201845 579 ntBASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb4Q6P8W9 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Gm11643-201ENSMUST00000119578 864 ntBASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC18.49■□□□□ 0.55
Hmgb4Q6P8W9 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Gm37292-201ENSMUST00000192062 758 ntBASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Gm42922-201ENSMUST00000195887 2078 ntBASIC18.48■□□□□ 0.55
Hmgb4Q6P8W9 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 Gm12382-201ENSMUST00000122005 922 ntBASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 AC121577.1-201ENSMUST00000227302 707 ntBASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb4Q6P8W9 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms