Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Rtl3Q6P1Y1 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rtl3Q6P1Y1 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rtl3Q6P1Y1 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rtl3Q6P1Y1 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rtl3Q6P1Y1 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rtl3Q6P1Y1 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rtl3Q6P1Y1 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rtl3Q6P1Y1 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rtl3Q6P1Y1 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rtl3Q6P1Y1 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Rtl3Q6P1Y1 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rtl3Q6P1Y1 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Mir1199-201ENSMUST00000117015 119 ntBASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Gm43183-201ENSMUST00000200632 547 ntBASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Rtl3Q6P1Y1 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Gm12382-201ENSMUST00000122005 922 ntBASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Rtl3Q6P1Y1 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Gm37292-201ENSMUST00000192062 758 ntBASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms