Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Gm37856-201ENSMUST00000191634 999 ntBASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Tgds-204ENSMUST00000228543 1594 ntBASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Sh3rf1Q69ZI1 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Gm26524-201ENSMUST00000192339 390 ntBASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh3rf1Q69ZI1 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Trmt13-210ENSMUST00000198454 880 ntBASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Gm10252-201ENSMUST00000209541 832 ntBASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.9■□□□□ 0.46
Sh3rf1Q69ZI1 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Sh3rf1Q69ZI1 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms