Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC19.93■□□□□ 0.78
Col11a1Q61245 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC19.93■□□□□ 0.78
Col11a1Q61245 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Col11a1Q61245 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col11a1Q61245 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col11a1Q61245 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col11a1Q61245 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col11a1Q61245 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col11a1Q61245 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col11a1Q61245 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col11a1Q61245 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col11a1Q61245 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col11a1Q61245 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC19.92■□□□□ 0.78
Col11a1Q61245 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
Col11a1Q61245 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC19.92■□□□□ 0.78
Col11a1Q61245 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col11a1Q61245 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC19.91■□□□□ 0.78
Col11a1Q61245 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col11a1Q61245 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col11a1Q61245 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
Col11a1Q61245 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col11a1Q61245 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col11a1Q61245 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col11a1Q61245 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Col11a1Q61245 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC19.91■□□□□ 0.78
Col11a1Q61245 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.91■□□□□ 0.78
Col11a1Q61245 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col11a1Q61245 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col11a1Q61245 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
Col11a1Q61245 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col11a1Q61245 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col11a1Q61245 Gm15794-201ENSMUST00000120182 631 ntBASIC19.9■□□□□ 0.78
Col11a1Q61245 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Gm45328-201ENSMUST00000210942 917 ntBASIC19.9■□□□□ 0.78
Col11a1Q61245 AC124569.2-201ENSMUST00000225998 818 ntBASIC19.9■□□□□ 0.78
Col11a1Q61245 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC19.9■□□□□ 0.78
Col11a1Q61245 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Gm18733-201ENSMUST00000173950 856 ntBASIC19.9■□□□□ 0.78
Col11a1Q61245 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC19.9■□□□□ 0.78
Col11a1Q61245 Gm5712-201ENSMUST00000199748 1043 ntBASIC19.9■□□□□ 0.78
Col11a1Q61245 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col11a1Q61245 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Col11a1Q61245 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col11a1Q61245 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
Col11a1Q61245 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
Col11a1Q61245 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col11a1Q61245 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Col11a1Q61245 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC19.89■□□□□ 0.77
Col11a1Q61245 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC19.89■□□□□ 0.77
Col11a1Q61245 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Col11a1Q61245 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col11a1Q61245 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col11a1Q61245 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col11a1Q61245 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col11a1Q61245 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC19.88■□□□□ 0.77
Col11a1Q61245 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col11a1Q61245 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC19.88■□□□□ 0.77
Col11a1Q61245 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col11a1Q61245 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col11a1Q61245 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col11a1Q61245 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col11a1Q61245 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col11a1Q61245 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col11a1Q61245 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC19.88■□□□□ 0.77
Col11a1Q61245 Gm5864-201ENSMUST00000202263 970 ntBASIC19.88■□□□□ 0.77
Col11a1Q61245 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col11a1Q61245 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
Col11a1Q61245 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col11a1Q61245 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col11a1Q61245 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC19.87■□□□□ 0.77
Col11a1Q61245 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC19.87■□□□□ 0.77
Col11a1Q61245 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC19.87■□□□□ 0.77
Col11a1Q61245 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC19.87■□□□□ 0.77
Col11a1Q61245 AC153889.1-201ENSMUST00000219257 330 ntBASIC19.87■□□□□ 0.77
Col11a1Q61245 AC125350.1-201ENSMUST00000225115 903 ntBASIC19.87■□□□□ 0.77
Col11a1Q61245 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col11a1Q61245 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col11a1Q61245 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Col11a1Q61245 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col11a1Q61245 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms