Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CtcfQ61164 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.46■□□□□ 0.71
CtcfQ61164 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CtcfQ61164 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CtcfQ61164 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CtcfQ61164 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CtcfQ61164 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CtcfQ61164 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CtcfQ61164 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CtcfQ61164 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CtcfQ61164 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CtcfQ61164 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CtcfQ61164 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.44■□□□□ 0.7
CtcfQ61164 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CtcfQ61164 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.44■□□□□ 0.7
CtcfQ61164 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CtcfQ61164 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.43■□□□□ 0.7
CtcfQ61164 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CtcfQ61164 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 Gm7291-201ENSMUST00000199147 382 ntBASIC19.43■□□□□ 0.7
CtcfQ61164 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.43■□□□□ 0.7
CtcfQ61164 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CtcfQ61164 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CtcfQ61164 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CtcfQ61164 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CtcfQ61164 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Gm6365-201ENSMUST00000054711 744 ntBASIC19.42■□□□□ 0.7
CtcfQ61164 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.42■□□□□ 0.7
CtcfQ61164 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CtcfQ61164 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CtcfQ61164 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CtcfQ61164 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CtcfQ61164 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CtcfQ61164 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CtcfQ61164 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CtcfQ61164 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CtcfQ61164 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CtcfQ61164 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.41■□□□□ 0.7
CtcfQ61164 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CtcfQ61164 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CtcfQ61164 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.4■□□□□ 0.7
CtcfQ61164 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CtcfQ61164 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CtcfQ61164 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CtcfQ61164 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CtcfQ61164 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CtcfQ61164 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CtcfQ61164 Gm22325-201ENSMUST00000158904 308 ntBASIC19.4■□□□□ 0.7
CtcfQ61164 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.4■□□□□ 0.7
CtcfQ61164 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CtcfQ61164 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CtcfQ61164 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.4■□□□□ 0.7
CtcfQ61164 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CtcfQ61164 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
CtcfQ61164 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CtcfQ61164 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CtcfQ61164 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CtcfQ61164 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CtcfQ61164 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CtcfQ61164 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 8.6 ms