Protein–RNA interactions for Protein: Q5R1C3

Trav3-3, T cell receptor alpha variable 3-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-3Q5R1C3 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trav3-3Q5R1C3 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trav3-3Q5R1C3 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Trav3-3Q5R1C3 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trav3-3Q5R1C3 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav3-3Q5R1C3 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Zkscan3-208ENSMUST00000224820 5398 ntBASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Gm6085-201ENSMUST00000182774 1470 ntBASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 AA386476-201ENSMUST00000098781 1665 ntBASIC13.28□□□□□ -0.28
Trav3-3Q5R1C3 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Trav3-3Q5R1C3 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trav3-3Q5R1C3 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trav3-3Q5R1C3 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Trav3-3Q5R1C3 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Trav3-3Q5R1C3 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Trav3-3Q5R1C3 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Trav3-3Q5R1C3 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trav3-3Q5R1C3 Gm26917-202ENSMUST00000192833 3329 ntBASIC13.27□□□□□ -0.28
Trav3-3Q5R1C3 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms