Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Gm26833-201ENSMUST00000180899 440 ntBASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Gm27454-201ENSMUST00000185090 204 ntBASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Gm28265-201ENSMUST00000188201 2319 ntBASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim40Q3UWA4 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim40Q3UWA4 Haglr-201ENSMUST00000100000 2085 ntBASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim40Q3UWA4 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Gm6139-201ENSMUST00000079261 882 ntBASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim40Q3UWA4 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms