Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sox1P53783 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sox1P53783 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sox1P53783 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sox1P53783 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Sox1P53783 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sox1P53783 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sox1P53783 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Sox1P53783 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Sox1P53783 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Sox1P53783 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC18.08■□□□□ 0.49
Sox1P53783 Auts2-212ENSMUST00000178555 309 ntBASIC18.08■□□□□ 0.48
Sox1P53783 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC18.08■□□□□ 0.48
Sox1P53783 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.08■□□□□ 0.48
Sox1P53783 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Sox1P53783 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.08■□□□□ 0.48
Sox1P53783 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Sox1P53783 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Sox1P53783 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.07■□□□□ 0.48
Sox1P53783 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sox1P53783 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sox1P53783 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sox1P53783 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sox1P53783 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC18.07■□□□□ 0.48
Sox1P53783 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Sox1P53783 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Sox1P53783 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC18.07■□□□□ 0.48
Sox1P53783 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Sox1P53783 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sox1P53783 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sox1P53783 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Sox1P53783 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sox1P53783 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sox1P53783 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.06■□□□□ 0.48
Sox1P53783 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sox1P53783 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Sox1P53783 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.06■□□□□ 0.48
Sox1P53783 Gm6736-201ENSMUST00000166583 948 ntBASIC18.06■□□□□ 0.48
Sox1P53783 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC18.06■□□□□ 0.48
Sox1P53783 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC18.06■□□□□ 0.48
Sox1P53783 AC161829.1-201ENSMUST00000220298 281 ntBASIC18.06■□□□□ 0.48
Sox1P53783 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sox1P53783 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sox1P53783 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.06■□□□□ 0.48
Sox1P53783 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Sox1P53783 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sox1P53783 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Sox1P53783 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Sox1P53783 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sox1P53783 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Sox1P53783 Gm23935-201ENSMUST00000102303 57 ntBASIC18.05■□□□□ 0.48
Sox1P53783 Gm24270-201ENSMUST00000102326 57 ntBASIC18.05■□□□□ 0.48
Sox1P53783 Gm24245-201ENSMUST00000157318 57 ntBASIC18.05■□□□□ 0.48
Sox1P53783 Ighv6-1-201ENSMUST00000193612 343 ntBASIC18.05■□□□□ 0.48
Sox1P53783 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Sox1P53783 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sox1P53783 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
Sox1P53783 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.04■□□□□ 0.48
Sox1P53783 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC18.04■□□□□ 0.48
Sox1P53783 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
Sox1P53783 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC18.04■□□□□ 0.48
Sox1P53783 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC18.04■□□□□ 0.48
Sox1P53783 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC18.04■□□□□ 0.48
Sox1P53783 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sox1P53783 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Sox1P53783 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.03■□□□□ 0.48
Sox1P53783 Gm24841-201ENSMUST00000158676 357 ntBASIC18.03■□□□□ 0.48
Sox1P53783 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Sox1P53783 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Sox1P53783 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
Sox1P53783 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sox1P53783 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.02■□□□□ 0.48
Sox1P53783 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sox1P53783 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sox1P53783 Gm11779-201ENSMUST00000118541 368 ntBASIC18.02■□□□□ 0.48
Sox1P53783 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.02■□□□□ 0.48
Sox1P53783 Gm5264-201ENSMUST00000190584 848 ntBASIC18.02■□□□□ 0.48
Sox1P53783 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms