Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC18.73■□□□□ 0.59
Shmt1P50431 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.73■□□□□ 0.59
Shmt1P50431 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Shmt1P50431 Mir5122-201ENSMUST00000175004 89 ntBASIC18.73■□□□□ 0.59
Shmt1P50431 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Shmt1P50431 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.73■□□□□ 0.59
Shmt1P50431 Gm29791-202ENSMUST00000207888 369 ntBASIC18.73■□□□□ 0.59
Shmt1P50431 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Shmt1P50431 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Shmt1P50431 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Shmt1P50431 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Shmt1P50431 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.73■□□□□ 0.59
Shmt1P50431 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Shmt1P50431 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Shmt1P50431 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.72■□□□□ 0.59
Shmt1P50431 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Shmt1P50431 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Shmt1P50431 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Shmt1P50431 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Shmt1P50431 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Shmt1P50431 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Shmt1P50431 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Shmt1P50431 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.71■□□□□ 0.59
Shmt1P50431 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.71■□□□□ 0.59
Shmt1P50431 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shmt1P50431 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shmt1P50431 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shmt1P50431 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shmt1P50431 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shmt1P50431 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Shmt1P50431 Gm10517-202ENSMUST00000192970 758 ntBASIC18.7■□□□□ 0.58
Shmt1P50431 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Shmt1P50431 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shmt1P50431 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Shmt1P50431 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Shmt1P50431 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shmt1P50431 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shmt1P50431 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Shmt1P50431 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Shmt1P50431 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Shmt1P50431 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.69■□□□□ 0.58
Shmt1P50431 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.69■□□□□ 0.58
Shmt1P50431 Gm37055-201ENSMUST00000191866 133 ntBASIC18.69■□□□□ 0.58
Shmt1P50431 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.69■□□□□ 0.58
Shmt1P50431 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Shmt1P50431 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Shmt1P50431 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shmt1P50431 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shmt1P50431 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.68■□□□□ 0.58
Shmt1P50431 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.68■□□□□ 0.58
Shmt1P50431 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.68■□□□□ 0.58
Shmt1P50431 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.68■□□□□ 0.58
Shmt1P50431 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Shmt1P50431 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Shmt1P50431 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
Shmt1P50431 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shmt1P50431 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
Shmt1P50431 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shmt1P50431 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shmt1P50431 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shmt1P50431 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Shmt1P50431 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms