Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm13234-201ENSMUST00000120010 747 ntBASIC21.18■□□□□ 0.98
Rfx1P48377 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.18■□□□□ 0.98
Rfx1P48377 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rfx1P48377 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC21.18■□□□□ 0.98
Rfx1P48377 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Rfx1P48377 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rfx1P48377 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rfx1P48377 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC21.17■□□□□ 0.98
Rfx1P48377 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Gm15039-201ENSMUST00000118914 875 ntBASIC21.17■□□□□ 0.98
Rfx1P48377 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Gm22325-201ENSMUST00000158904 308 ntBASIC21.17■□□□□ 0.98
Rfx1P48377 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.17■□□□□ 0.98
Rfx1P48377 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC21.17■□□□□ 0.98
Rfx1P48377 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Gm43808-201ENSMUST00000202534 2065 ntBASIC21.17■□□□□ 0.98
Rfx1P48377 Ddx41-204ENSMUST00000224765 2199 ntBASIC21.17■□□□□ 0.98
Rfx1P48377 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx1P48377 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rfx1P48377 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC21.16■□□□□ 0.98
Rfx1P48377 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rfx1P48377 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.16■□□□□ 0.98
Rfx1P48377 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rfx1P48377 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rfx1P48377 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rfx1P48377 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Rfx1P48377 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rfx1P48377 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rfx1P48377 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rfx1P48377 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rfx1P48377 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.15■□□□□ 0.98
Rfx1P48377 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Rfx1P48377 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rfx1P48377 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Rfx1P48377 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rfx1P48377 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Rfx1P48377 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
Rfx1P48377 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Rfx1P48377 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Rfx1P48377 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Rfx1P48377 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Rfx1P48377 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Rfx1P48377 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.14■□□□□ 0.97
Rfx1P48377 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Rfx1P48377 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Rfx1P48377 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC21.13■□□□□ 0.97
Rfx1P48377 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.13■□□□□ 0.97
Rfx1P48377 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Rfx1P48377 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.13■□□□□ 0.97
Rfx1P48377 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx1P48377 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Rfx1P48377 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Rfx1P48377 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Rfx1P48377 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC21.12■□□□□ 0.97
Rfx1P48377 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx1P48377 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx1P48377 Gm6420-201ENSMUST00000193885 723 ntBASIC21.12■□□□□ 0.97
Rfx1P48377 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Rfx1P48377 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx1P48377 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx1P48377 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx1P48377 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx1P48377 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx1P48377 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx1P48377 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx1P48377 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx1P48377 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx1P48377 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx1P48377 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Rfx1P48377 Nespas-201ENSMUST00000143738 1083 ntBASIC21.11■□□□□ 0.97
Rfx1P48377 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx1P48377 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Rfx1P48377 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx1P48377 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Rfx1P48377 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx1P48377 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx1P48377 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms