Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdx1P18111 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdx1P18111 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdx1P18111 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdx1P18111 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Cdx1P18111 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdx1P18111 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC14.28□□□□□ -0.12
Cdx1P18111 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdx1P18111 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cdx1P18111 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cdx1P18111 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdx1P18111 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdx1P18111 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Cdx1P18111 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdx1P18111 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cdx1P18111 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cdx1P18111 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cdx1P18111 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cdx1P18111 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdx1P18111 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdx1P18111 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdx1P18111 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdx1P18111 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdx1P18111 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Cdx1P18111 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cdx1P18111 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdx1P18111 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC14.26□□□□□ -0.13
Cdx1P18111 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Cdx1P18111 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC14.26□□□□□ -0.13
Cdx1P18111 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Cdx1P18111 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Cdx1P18111 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Cdx1P18111 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdx1P18111 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Cdx1P18111 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC14.25□□□□□ -0.13
Cdx1P18111 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Cdx1P18111 AC069562.2-201ENSMUST00000224644 2146 ntBASIC14.25□□□□□ -0.13
Cdx1P18111 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC14.25□□□□□ -0.13
Cdx1P18111 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Cdx1P18111 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdx1P18111 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Gm14026-201ENSMUST00000120625 1789 ntBASIC14.24□□□□□ -0.13
Cdx1P18111 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Cdx1P18111 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC14.24□□□□□ -0.13
Cdx1P18111 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Cdx1P18111 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC14.24□□□□□ -0.13
Cdx1P18111 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC14.24□□□□□ -0.13
Cdx1P18111 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Cdx1P18111 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC14.24□□□□□ -0.13
Cdx1P18111 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Gm43808-201ENSMUST00000202534 2065 ntBASIC14.24□□□□□ -0.13
Cdx1P18111 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
Cdx1P18111 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdx1P18111 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms