Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC21.2■□□□□ 0.98
Col3a1P08121 Gm7367-201ENSMUST00000057611 492 ntBASIC21.2■□□□□ 0.98
Col3a1P08121 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col3a1P08121 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Col3a1P08121 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col3a1P08121 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col3a1P08121 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col3a1P08121 Gm18101-201ENSMUST00000215769 548 ntBASIC21.19■□□□□ 0.98
Col3a1P08121 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col3a1P08121 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col3a1P08121 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Col3a1P08121 Fst-202ENSMUST00000223640 2612 ntBASIC21.18■□□□□ 0.98
Col3a1P08121 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col3a1P08121 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Col3a1P08121 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Col3a1P08121 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col3a1P08121 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC21.18■□□□□ 0.98
Col3a1P08121 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col3a1P08121 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col3a1P08121 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col3a1P08121 Gm5953-201ENSMUST00000220644 2616 ntBASIC21.17■□□□□ 0.98
Col3a1P08121 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
Col3a1P08121 Gm6345-202ENSMUST00000180900 204 ntBASIC21.17■□□□□ 0.98
Col3a1P08121 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col3a1P08121 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col3a1P08121 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Col3a1P08121 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col3a1P08121 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Gm13474-201ENSMUST00000122466 815 ntBASIC21.16■□□□□ 0.98
Col3a1P08121 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC21.16■□□□□ 0.98
Col3a1P08121 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Col3a1P08121 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Col3a1P08121 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
Col3a1P08121 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col3a1P08121 Gm43272-201ENSMUST00000200599 1584 ntBASIC21.15■□□□□ 0.98
Col3a1P08121 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Mir1668-201ENSMUST00000184114 107 ntBASIC21.15■□□□□ 0.98
Col3a1P08121 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col3a1P08121 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Col3a1P08121 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col3a1P08121 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Col3a1P08121 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col3a1P08121 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col3a1P08121 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC21.14■□□□□ 0.98
Col3a1P08121 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
Col3a1P08121 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC21.14■□□□□ 0.98
Col3a1P08121 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC21.14■□□□□ 0.98
Col3a1P08121 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col3a1P08121 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Col3a1P08121 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col3a1P08121 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col3a1P08121 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Col3a1P08121 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 AA414768-201ENSMUST00000121924 1257 ntBASIC21.13■□□□□ 0.97
Col3a1P08121 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC21.13■□□□□ 0.97
Col3a1P08121 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC21.13■□□□□ 0.97
Col3a1P08121 AC120002.2-201ENSMUST00000220205 773 ntBASIC21.13■□□□□ 0.97
Col3a1P08121 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Col3a1P08121 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC21.13■□□□□ 0.97
Col3a1P08121 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Col3a1P08121 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms