Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Gm22697-201ENSMUST00000175194 63 ntBASIC21.34■■□□□ 1.01
Ube4aE9Q735 Gm6728-201ENSMUST00000178117 1065 ntBASIC21.34■■□□□ 1.01
Ube4aE9Q735 Gm18101-201ENSMUST00000215769 548 ntBASIC21.34■■□□□ 1.01
Ube4aE9Q735 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ube4aE9Q735 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ube4aE9Q735 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ube4aE9Q735 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ube4aE9Q735 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ube4aE9Q735 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC21.33■■□□□ 1.01
Ube4aE9Q735 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ube4aE9Q735 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ube4aE9Q735 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ube4aE9Q735 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC21.33■■□□□ 1
Ube4aE9Q735 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Ube4aE9Q735 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Ube4aE9Q735 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Ube4aE9Q735 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 AA414768-201ENSMUST00000121924 1257 ntBASIC21.32■■□□□ 1
Ube4aE9Q735 Gm13474-201ENSMUST00000122466 815 ntBASIC21.32■■□□□ 1
Ube4aE9Q735 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Ube4aE9Q735 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC21.32■■□□□ 1
Ube4aE9Q735 Gm37025-201ENSMUST00000195159 829 ntBASIC21.32■■□□□ 1
Ube4aE9Q735 Il3ra-202ENSMUST00000223589 738 ntBASIC21.32■■□□□ 1
Ube4aE9Q735 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Ube4aE9Q735 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ube4aE9Q735 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ube4aE9Q735 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ube4aE9Q735 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ube4aE9Q735 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC21.31■■□□□ 1
Ube4aE9Q735 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ube4aE9Q735 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC21.31■■□□□ 1
Ube4aE9Q735 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ube4aE9Q735 Gm6345-202ENSMUST00000180900 204 ntBASIC21.31■■□□□ 1
Ube4aE9Q735 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ube4aE9Q735 Gm9731-201ENSMUST00000209480 747 ntBASIC21.31■■□□□ 1
Ube4aE9Q735 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC21.31■■□□□ 1
Ube4aE9Q735 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ube4aE9Q735 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ube4aE9Q735 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ube4aE9Q735 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
Ube4aE9Q735 Gm35558-201ENSMUST00000222675 2219 ntBASIC21.31■■□□□ 1
Ube4aE9Q735 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Ube4aE9Q735 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Ube4aE9Q735 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ube4aE9Q735 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ube4aE9Q735 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ube4aE9Q735 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC21.3■■□□□ 1
Ube4aE9Q735 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC21.3■■□□□ 1
Ube4aE9Q735 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Ube4aE9Q735 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ube4aE9Q735 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC21.3■■□□□ 1
Ube4aE9Q735 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ube4aE9Q735 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ube4aE9Q735 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ube4aE9Q735 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ube4aE9Q735 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Ube4aE9Q735 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ube4aE9Q735 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.29■■□□□ 1
Ube4aE9Q735 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.29■■□□□ 1
Ube4aE9Q735 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ube4aE9Q735 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
Ube4aE9Q735 Gm7370-201ENSMUST00000219471 767 ntBASIC21.29■■□□□ 1
Ube4aE9Q735 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ube4aE9Q735 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ube4aE9Q735 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 Fst-202ENSMUST00000223640 2612 ntBASIC21.28■■□□□ 1
Ube4aE9Q735 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC21.28■■□□□ 1
Ube4aE9Q735 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ube4aE9Q735 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC21.27■■□□□ 1
Ube4aE9Q735 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC21.27■■□□□ 1
Ube4aE9Q735 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms