Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Chd6A3KFM7 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd6A3KFM7 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC14.43□□□□□ -0.1
Chd6A3KFM7 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Chd6A3KFM7 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Chd6A3KFM7 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd6A3KFM7 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd6A3KFM7 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd6A3KFM7 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Chd6A3KFM7 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd6A3KFM7 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd6A3KFM7 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC14.42□□□□□ -0.1
Chd6A3KFM7 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd6A3KFM7 Mir770-201ENSMUST00000103252 94 ntBASIC14.42□□□□□ -0.1
Chd6A3KFM7 Gm27000-201ENSMUST00000182943 842 ntBASIC14.42□□□□□ -0.1
Chd6A3KFM7 Gm9694-201ENSMUST00000193347 1189 ntBASIC14.42□□□□□ -0.1
Chd6A3KFM7 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.42□□□□□ -0.1
Chd6A3KFM7 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Chd6A3KFM7 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Gm37352-201ENSMUST00000193908 2181 ntBASIC14.41□□□□□ -0.1
Chd6A3KFM7 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Gm14494-201ENSMUST00000118786 435 ntBASIC14.41□□□□□ -0.1
Chd6A3KFM7 Chchd1-203ENSMUST00000224633 557 ntBASIC14.41□□□□□ -0.1
Chd6A3KFM7 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Chd6A3KFM7 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.4□□□□□ -0.1
Chd6A3KFM7 Gm27397-201ENSMUST00000184997 107 ntBASIC14.4□□□□□ -0.1
Chd6A3KFM7 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Hist1h2al-201ENSMUST00000091708 339 ntBASIC14.4□□□□□ -0.1
Chd6A3KFM7 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.4□□□□□ -0.1
Chd6A3KFM7 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Chd6A3KFM7 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Chd6A3KFM7 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.11
Chd6A3KFM7 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Gm25911-201ENSMUST00000157621 56 ntBASIC14.39□□□□□ -0.11
Chd6A3KFM7 Gm26039-201ENSMUST00000158152 144 ntBASIC14.39□□□□□ -0.11
Chd6A3KFM7 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd6A3KFM7 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Gm8309-201ENSMUST00000206627 1448 ntBASIC14.38□□□□□ -0.11
Chd6A3KFM7 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd6A3KFM7 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms