Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav1A0A075B5Z4 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.46■□□□□ 0.23
Trav1A0A075B5Z4 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC16.46■□□□□ 0.23
Trav1A0A075B5Z4 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav1A0A075B5Z4 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Trav1A0A075B5Z4 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav1A0A075B5Z4 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Gm15635-204ENSMUST00000208024 2539 ntBASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Gm43859-201ENSMUST00000200075 1412 ntBASIC16.45■□□□□ 0.22
Trav1A0A075B5Z4 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Gm5408-201ENSMUST00000197998 747 ntBASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Mtag2-201ENSMUST00000058665 714 ntBASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav1A0A075B5Z4 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Gm29241-201ENSMUST00000189260 1096 ntBASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav1A0A075B5Z4 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Gm13401-201ENSMUST00000117074 291 ntBASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Mir6349-201ENSMUST00000184059 97 ntBASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Gm4968-201ENSMUST00000071458 858 ntBASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC16.42■□□□□ 0.22
Trav1A0A075B5Z4 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav1A0A075B5Z4 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav1A0A075B5Z4 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav1A0A075B5Z4 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Trav1A0A075B5Z4 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav1A0A075B5Z4 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav1A0A075B5Z4 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav1A0A075B5Z4 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav1A0A075B5Z4 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC16.41■□□□□ 0.22
Trav1A0A075B5Z4 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms