Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Flg-201ENSMUST00000050758 1488 ntBASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 CT025689.6-201ENSMUST00000224991 1104 ntBASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Tgds-204ENSMUST00000228543 1594 ntBASIC19.53■□□□□ 0.72
Prpf40aQ9R1C7 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Prpf40aQ9R1C7 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Prpf40aQ9R1C7 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Prpf40aQ9R1C7 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Prpf40aQ9R1C7 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Gm20049-201ENSMUST00000219950 730 ntBASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Prpf40aQ9R1C7 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.48■□□□□ 0.71
Prpf40aQ9R1C7 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Prpf40aQ9R1C7 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.47■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms