Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.4■□□□□ 0.54
Scn5aQ9JJV9 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn5aQ9JJV9 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn5aQ9JJV9 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn5aQ9JJV9 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn5aQ9JJV9 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn5aQ9JJV9 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
Scn5aQ9JJV9 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Gm17807-201ENSMUST00000186869 298 ntBASIC18.39■□□□□ 0.53
Scn5aQ9JJV9 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Gm13474-201ENSMUST00000122466 815 ntBASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Gm18958-201ENSMUST00000174258 762 ntBASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn5aQ9JJV9 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Gm29518-201ENSMUST00000190858 372 ntBASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn5aQ9JJV9 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Gm29791-202ENSMUST00000207888 369 ntBASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Scn5aQ9JJV9 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Gm10566-201ENSMUST00000086739 996 ntBASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn5aQ9JJV9 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms