Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Psmb5-202ENSMUST00000227257 622 ntBASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf1Q9EPU0 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Gm37805-201ENSMUST00000192612 1094 ntBASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Upf1Q9EPU0 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 AC108846.1-201ENSMUST00000214531 513 ntBASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 AC157650.3-201ENSMUST00000225058 1476 ntBASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Upf1Q9EPU0 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf1Q9EPU0 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Upf1Q9EPU0 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
Upf1Q9EPU0 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf1Q9EPU0 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf1Q9EPU0 Gm4995-201ENSMUST00000117247 432 ntBASIC20.26■□□□□ 0.83
Upf1Q9EPU0 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC20.26■□□□□ 0.83
Upf1Q9EPU0 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC20.26■□□□□ 0.83
Upf1Q9EPU0 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf1Q9EPU0 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Upf1Q9EPU0 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Upf1Q9EPU0 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Gm26308-201ENSMUST00000157768 69 ntBASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Mir5126-201ENSMUST00000175513 77 ntBASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.25■□□□□ 0.83
Upf1Q9EPU0 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Gm14494-201ENSMUST00000118786 435 ntBASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf1Q9EPU0 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf1Q9EPU0 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC20.23■□□□□ 0.83
Upf1Q9EPU0 Gm12260-201ENSMUST00000122447 411 ntBASIC20.23■□□□□ 0.83
Upf1Q9EPU0 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf1Q9EPU0 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf1Q9EPU0 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Upf1Q9EPU0 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf1Q9EPU0 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf1Q9EPU0 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Upf1Q9EPU0 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.22■□□□□ 0.83
Upf1Q9EPU0 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Upf1Q9EPU0 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Upf1Q9EPU0 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms