Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Gm13181-201ENSMUST00000120117 1069 ntBASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Arhgef33-211ENSMUST00000225658 473 ntBASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Tgds-204ENSMUST00000228543 1594 ntBASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Vps28Q9D1C8 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC18.16■□□□□ 0.5
Vps28Q9D1C8 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Mir6349-201ENSMUST00000184059 97 ntBASIC18.15■□□□□ 0.5
Vps28Q9D1C8 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Gm18025-201ENSMUST00000221733 862 ntBASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps28Q9D1C8 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Vps28Q9D1C8 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Vps28Q9D1C8 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Vps28Q9D1C8 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Gm42545-201ENSMUST00000202755 922 ntBASIC18.14■□□□□ 0.49
Vps28Q9D1C8 AC153881.1-201ENSMUST00000214448 284 ntBASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Vps28Q9D1C8 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps28Q9D1C8 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms