Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cldnd1Q9CQX5 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Cldnd1Q9CQX5 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cldnd1Q9CQX5 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
Cldnd1Q9CQX5 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cldnd1Q9CQX5 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cldnd1Q9CQX5 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cldnd1Q9CQX5 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cldnd1Q9CQX5 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cldnd1Q9CQX5 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
Cldnd1Q9CQX5 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Gm24589-201ENSMUST00000116692 94 ntBASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cldnd1Q9CQX5 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cldnd1Q9CQX5 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Gm13401-201ENSMUST00000117074 291 ntBASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cldnd1Q9CQX5 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Gm10418-201ENSMUST00000100943 576 ntBASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Gm27357-201ENSMUST00000183754 135 ntBASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Gm9731-201ENSMUST00000209480 747 ntBASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Cldnd1Q9CQX5 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cldnd1Q9CQX5 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Gm26039-201ENSMUST00000158152 144 ntBASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Gm6623-201ENSMUST00000173570 544 ntBASIC18.15■□□□□ 0.5
Cldnd1Q9CQX5 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms