Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.3■□□□□ 0.36
Msh4Q99MT2 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Msh4Q99MT2 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msh4Q99MT2 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.28■□□□□ 0.36
Msh4Q99MT2 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Gm27275-201ENSMUST00000184318 272 ntBASIC17.28■□□□□ 0.36
Msh4Q99MT2 AC140264.2-202ENSMUST00000218746 817 ntBASIC17.28■□□□□ 0.36
Msh4Q99MT2 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh4Q99MT2 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.27■□□□□ 0.36
Msh4Q99MT2 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh4Q99MT2 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh4Q99MT2 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh4Q99MT2 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh4Q99MT2 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh4Q99MT2 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.27■□□□□ 0.36
Msh4Q99MT2 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Msh4Q99MT2 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Msh4Q99MT2 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Msh4Q99MT2 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Msh4Q99MT2 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.26■□□□□ 0.35
Msh4Q99MT2 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msh4Q99MT2 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.25■□□□□ 0.35
Msh4Q99MT2 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Msh4Q99MT2 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msh4Q99MT2 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Dio3-201ENSMUST00000097228 1449 ntBASIC17.24■□□□□ 0.35
Msh4Q99MT2 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Gm8520-201ENSMUST00000186517 868 ntBASIC17.24■□□□□ 0.35
Msh4Q99MT2 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.24■□□□□ 0.35
Msh4Q99MT2 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC17.24■□□□□ 0.35
Msh4Q99MT2 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms