Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdk5rap3Q99LM2 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdk5rap3Q99LM2 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Gm5874-201ENSMUST00000096101 508 ntBASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Gm13509-201ENSMUST00000119733 1308 ntBASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.4■□□□□ 0.54
Cdk5rap3Q99LM2 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cdk5rap3Q99LM2 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cdk5rap3Q99LM2 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cdk5rap3Q99LM2 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Gm37563-201ENSMUST00000192580 1513 ntBASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdk5rap3Q99LM2 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdk5rap3Q99LM2 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC18.38■□□□□ 0.53
Cdk5rap3Q99LM2 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Cdk5rap3Q99LM2 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdk5rap3Q99LM2 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdk5rap3Q99LM2 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdk5rap3Q99LM2 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdk5rap3Q99LM2 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Cdk5rap3Q99LM2 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdk5rap3Q99LM2 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Cdk5rap3Q99LM2 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cdk5rap3Q99LM2 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 Gm6365-201ENSMUST00000054711 744 ntBASIC18.35■□□□□ 0.53
Cdk5rap3Q99LM2 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms