Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.7■□□□□ 0.58
Usp11Q99K46 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Usp11Q99K46 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.7■□□□□ 0.58
Usp11Q99K46 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp11Q99K46 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Usp11Q99K46 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Usp11Q99K46 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC18.69■□□□□ 0.58
Usp11Q99K46 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.69■□□□□ 0.58
Usp11Q99K46 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.69■□□□□ 0.58
Usp11Q99K46 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.69■□□□□ 0.58
Usp11Q99K46 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Usp11Q99K46 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp11Q99K46 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.68■□□□□ 0.58
Usp11Q99K46 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Usp11Q99K46 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.68■□□□□ 0.58
Usp11Q99K46 Gm26524-201ENSMUST00000192339 390 ntBASIC18.68■□□□□ 0.58
Usp11Q99K46 Gm5408-201ENSMUST00000197998 747 ntBASIC18.68■□□□□ 0.58
Usp11Q99K46 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.68■□□□□ 0.58
Usp11Q99K46 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Usp11Q99K46 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp11Q99K46 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp11Q99K46 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Usp11Q99K46 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp11Q99K46 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp11Q99K46 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp11Q99K46 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp11Q99K46 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp11Q99K46 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp11Q99K46 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Usp11Q99K46 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Usp11Q99K46 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp11Q99K46 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.67■□□□□ 0.58
Usp11Q99K46 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp11Q99K46 Gm43859-201ENSMUST00000200075 1412 ntBASIC18.66■□□□□ 0.58
Usp11Q99K46 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 Gm4968-201ENSMUST00000071458 858 ntBASIC18.66■□□□□ 0.58
Usp11Q99K46 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC18.66■□□□□ 0.58
Usp11Q99K46 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Usp11Q99K46 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp11Q99K46 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp11Q99K46 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
Usp11Q99K46 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.65■□□□□ 0.58
Usp11Q99K46 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp11Q99K46 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.65■□□□□ 0.58
Usp11Q99K46 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp11Q99K46 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.65■□□□□ 0.58
Usp11Q99K46 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp11Q99K46 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.65■□□□□ 0.58
Usp11Q99K46 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Usp11Q99K46 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp11Q99K46 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp11Q99K46 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp11Q99K46 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp11Q99K46 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usp11Q99K46 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usp11Q99K46 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp11Q99K46 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Usp11Q99K46 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp11Q99K46 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp11Q99K46 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp11Q99K46 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms